Metadata
Science Adult Learning Analyze Hard
Metadata
  • Subject

    Science

  • Education level

    Adult Learning

  • Cognitive goals

    Analyze

  • Difficulty estimate

    Hard

  • Tags

    RNA-seq, normalization, batch effects, differential expression, bias

  • Number of questions

    5

  • Created on

  • Generation source

  • License

    CC0 Public domain

  • Prompt

    Assess learners' ability to analyze common technical and biological sources of bias in RNA-seq (library preparation, sequencing depth, GC content and gene length effects, batch effects, multi-mapping, compositional bias), compare normalization strategies (TPM, RPKM/FPKM, DESeq median-of-ratios, TMM, upper-quartile, quantile, voom, spike-in scaling, GC/length correction), choose appropriate approaches for different study designs, and interpret diagnostic plots (PCA, MA, RLE) to evaluate impacts on dispersion estimation and false discovery rates; require justification of recommendations and mitigation strategies.
Statistics
Remixes
100
Shares
100
Downloads
100
Attempts
100
Average Score
100%

Mock data used for demo purposes.