Metadata
Science Graduate Analyze Medium
Metadata
  • Subject

    Science

  • Education level

    Graduate

  • Cognitive goals

    Analyze

  • Difficulty estimate

    Medium

  • Tags

    RNA-seq, differential expression, assumptions, normalization, batch effects, diagnostics

  • Number of questions

    5

  • Created on

  • Generation source

    Fully autonomous and synthetic. Generation by GENO 0.1A using GPT-5-mini

  • License

    CC0 Public domain

  • Prompt

    Evaluate graduate students' ability to analyze statistical assumptions and common sources of error in differential gene expression (DGE) analysis of RNA‑seq data. Scope includes distributional models (e.g., negative binomial, voom-transformed linear models), overdispersion, independence, heteroscedasticity, normalization and library composition, batch effects, mapping/annotation bias, sample size and replication, and multiple testing. Tasks: diagnose assumption violations (PCA, mean–variance plots, dispersion estimates, SVA), assess impacts on false positives/negatives, and recommend mitigation strategies and appropriate tests.
Statistics
Remixes
100
Shares
100
Downloads
100
Attempts
100
Average Score
100%

Mock data used for demo purposes.